rs45828046 SNP Detail

Summary

• ID
  rs45828046
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131671078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTAGATTCC CACACTGCTT TCCCATTGCA
  TTGGTGGCCA AGGGACCCAC AGCTCTGCTC CCAAAGGCAT CTGGGAACAT GGTCATTGGC
  TCTGGTTCCT GGAAGGGATG GTACAGAGAG TTGATGGCTT CCAGAACACC TTTCCTAAAT
  K
  TGCTGTAGGT CCAGTTTCTT AAGCTTCTTT ACTCTAGTGT TTCTGAGCCT CATGGCATCT
  CTGATATTTC TGAGCACTGC ACAGGGACGG TCTTCACAAT GATTTAAGGT CGGGGATGGA
  GCTGGAAAGC AAGTCTCCAC CTCAGCTCCG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145481763	ENSMUSSNP5139755	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss319975129	CHEV_1_133639917	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs45828046					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131671078 () rs orientation: forward

Symbol	Name	Function Class
Rr19210	regulatory region 19210	1878 bp distal
Rr28486	regulatory region 28486	722 bp proximal
Slc26a9	solute carrier family 26, member 9	682 bp upstream
Tssr8660	transcription start site region 8660	671 bp upstream
Tssr8661	transcription start site region 8661	838 bp upstream