rs45828357 SNP Detail

Summary

• ID
  rs45828357
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTTTCAG AGATCCTGAG
  TCCTATCCCC AGCAATCAGA TGGTGGCTCA CCACCATGTG CAATGGAATC CAATGCCCTG
  TCCTGGTATG CAGGTATACA TGCAATAGAG CACTCAGATA CATAAAATAA ATAAACCTTA
  AAAAAAGAAA AGACTAGTAC CCAAAATGTC TTTAGGCCCA GCCAAGGAAT TAAATAGGCA
  R
  GGACTTACAG GCTTATTTTA AAAAGTGGTT TTGTTTTGTT TGGGCTAGGC AGAAGCTTGT
  CCCTTTTGCT CACACCTAAC ACACACACTC TCTCTCTCTC TGTGTACTCA GTGTCTCACA
  AAAACACCCT TTCTTATACC CAGTCTGTTA CACTTTGTAA TGTAACCTAG TTTCTTTCTT
  ACAACAGCAT CTCACAAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874550	ENSMUSSNP1507843	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320958017	CHEV_3_127600952	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45828357					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691683 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1511 bp distal
Fam241a	family with sequence similarity 241, member A	1711 bp upstream
Rr398009	regulatory region 398009	1461 bp downstream
Rr584897	regulatory region 584897	1220 bp distal
Tssr35608	transcription start site region 35608	1801 bp upstream
Tssr35609	transcription start site region 35609	1764 bp upstream
Tssr35610	transcription start site region 35610	1697 bp upstream