rs45828460 SNP Detail

Summary

• ID
  rs45828460
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:89584552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAAAATAT AATTACATAC TTTCCTCCTC CTTTTCTTCC
  TGGAAACCTC TCCCATGTTC CCCCTACTCT CTCTTAAGTT TATAGCATTT TGCCTTTAAT
  S
  ATTATTGTAT CATATATGCA TGTATGTGAA TAAATATATA AATGAGACCT GCTGAGTCCA
  TTTACTGTTG TTTGTACAAC TTAATTAAAA CATAATTTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148801876	ENSMUSSNP4022057	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss321604689	CHEV_5_89865718	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45828460					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89584552 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	within coordinates
Gm72766	predicted gene, 72766	within coordinates
Tssr51705	transcription start site region 51705	1636 bp upstream
Tssr51706	transcription start site region 51706	1105 bp upstream
Tssr51707	transcription start site region 51707	1045 bp upstream
Tssr51708	transcription start site region 51708	1572 bp downstream
Tssr51709	transcription start site region 51709	1749 bp downstream