rs45829679 SNP Detail

Summary

• ID
  rs45829679
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177993694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ATGGCTCCCT TTATAGGGGT ATTAGCCATT ACCTTTGGAA
  ATATCACTGG ATGCAATAAC ATAAAATGTA ATAAAGTATG TTTAGGATAA TTATTATCAA
  T
  GAAACTAGAA TAACTGCATC TAAGAATGGC CCATTCATCT ATAGTAGCAC ACAATATTTG
  TATTTGTGTG GCAGTATATG GGATAATTAT GCTATCAGGC A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss146354063	ENSMUSSNP5891009	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs45829679					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177993694 () rs orientation: forward

Symbol	Name	Function Class
Catspere2	cation channel sperm associated auxiliary subunit epsilon 2	within coordinates
Gm69636	predicted gene, 69636	within coordinates