rs45830019 SNP Detail

Summary

• ID
  rs45830019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119825049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAATATGG AGATACAGGA
  GGAGGTAACC AGGATGGAGG AGTAGCAGAT AAAAGGAGAC ACCCGCACCC CTCCCACACA
  CACACACACC AATCTGCCCA CATAGTCTCA ACTCAGACCA ACTTCGCTTT GTCCAGATTT
  TTTGTTGTTG TACTATATAA ACTCCAAGTT TGGGACTTTT CTTATTTTTC TCCCGGCCGC
  R
  TCTACAGGGA CAAAGGAAGA CCAGAGTTCT TGCAACCACC AGCCCCCCTT GCGACTCCCA
  TCCCCGCAGT GCTGGGGGAC CTGCAGGGCT GGAGTGCCTT GGAGATCCGT GGATATAAGG
  TCATGAATGC TGGTACCGGT TAGAACCCTC CGGGCGCCCG CCCACCAGCC CGCCAGTGGG
  GAAGATCGGC TCCAGGCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61463921	NES16583242	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45830019					SNP	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61463921	NES16583242	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119825049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16460	CpG island 16460	79 bp proximal
Cpgi16461	CpG island 16461	904 bp proximal
Gm71505	predicted gene, 71505	1180 bp upstream
Tbx3os2	T-box 3, opposite strand 2	within coordinates
Tssr48472	transcription start site region 48472	119 bp downstream