rs45832390 SNP Detail

Summary

• ID
  rs45832390
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26755290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCA TTCATCCTGC AGGACATGAT
  R
  TGTGTGAGCT CTGTTATGTA TCAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss145405393	ENSMUSSNP6419573	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325342273	CHEV_17_26673261	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs45832390					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26755290 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	within coordinates
Gm50275	predicted gene, 50275	59 bp downstream
Gm64855	predicted gene, 64855	557 bp downstream
Rr405114	regulatory region 405114	1734 bp upstream
Rr523870	regulatory region 523870	1785 bp distal
Rr523871	regulatory region 523871	1272 bp distal
Rr523872	regulatory region 523872	973 bp distal
Rr523873	regulatory region 523873	190 bp distal
Rr523874	regulatory region 523874	1476 bp proximal
Rr523875	regulatory region 523875	1914 bp proximal
Tssr5048	transcription start site region 5048	959 bp downstream
Tssr5049	transcription start site region 5049	908 bp upstream
Tssr5050	transcription start site region 5050	480 bp downstream