rs45834242 SNP Detail

Summary

• ID
  rs45834242
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135661410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTACCCAGC CATTCGATAG AAAATTCAGA
  TTTTATTCTC TTTTGGGATT ATCAAGACAG TTAACTAGGA CGAACAGAAC AAAGTCAGCG
  AGTCCCAAAG GGAACAGGAC TCTCTGAATG AACCCTCTGT GGAAAATGCA ATCACAGAAG
  R
  CAGTGGTGAG CCCTCCttgt tattttcaga tatgtgaagc ccttagatgt cctagactca
  atggtaatcc tcctgcctct cttccccaag tgctgaggtt atacacatgt gctcctttgc
  ccaacAGCAA TGATTTGTTC ACCTAGGGCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60803892	NES16474372	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A		A		G	A	A		G
ss145544320	ENSMUSSNP5872942	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A					G
ss319992794	CHEV_1_137630249	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs45834242					SNP	G	A	A	A	A	A	G	A	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803892	NES16474372	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135661410 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Csrp1	cysteine and glycine-rich protein 1			Intron
				Noncoding-Transcript-Variant
Rr419257	regulatory region 419257			526 bp distal
Rr419258	regulatory region 419258			363 bp proximal