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rs45834501 SNP Detail
Summary
  • ID
    rs45834501
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:153337176 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGGGTTCTGC AGTGTCAGGG
    GTTGAATGGC CACAGGATGT TGAAGCAGCC ATCCAAACAC CCTCTTTTCC AATACCATAT
    CTGCCTTAGG TTGTATTTTT CTCCATCTAC CTCAGTGGAC ACATCAAATC TCAACAGACT
    GGATCAGAGA TGATACAAGA ACCCAGCTGT CTTCTGTAAG GGGAGATGGG AGACTGTGCG
    Y
    CAACTGCTAC CATTTCTACT ACTTTGGGGG CCTGCAAATT ATTTCTCAGA AATATATGTA
    ATTTATGCTA ACATGAAATG GGTTCGTTTG GTTTTTTTTT AAACAAATTA ACATTTTTAT
    ATCCTGCCAG CCTCAATTTC TAGTACTATT CAGTGGATAC AACTCCTGTA AGGAAAAGCT
    TTTCTCAGTA CCTTCTTTTT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss136110128 ENSMUSSNP5162480 ENSEMBL ENSEMBL_Sanger f SNP C T T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs45834501 SNP C T T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:153337176 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr587712 regulatory region 587712 493 bp proximal
St6galnac3 ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 Intron
Noncoding-Transcript-Variant
Tssr32432 transcription start site region 32432 610 bp downstream
Tssr36231 transcription start site region 36231 414 bp upstream
Tssr36232 transcription start site region 36232 1926 bp downstream
Tssr36233 transcription start site region 36233 1978 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory

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