rs45834538 SNP Detail

Summary

• ID
  rs45834538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126574940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCCCTT TAAATATCAA
  GTGGGGAAGA GAATCTATTG GATATATTTC CAACCACTGG TATTTCTGTT TCTTCGTTGT
  CTGTTTTAAT ATTCCTATTT GTTCTTTGGA GTAAAAGCCA TGTTATTCCT GGAGACAGCA
  TGTTCTTATT AACATTAATA GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTATCAGTCC
  Y
  GCATTCTTAG GAGCTAAATC TCCTGACAAA GAAGATGTTG CCTACTGTGT TCCAGCAAGC
  TGTTTGCACA ATGTATTCTT TCCTGAAATC CATGCATTTG GATGAATGAT TCAGAATATT
  TAGAATAGAG TCAACTGACA GTTCAAGTGA TGGGGTTCTG AGTAAGAAAA AGAATGATAG
  CATTTTCTTG ACATTTTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135841085	ENSMUSSNP5407196	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45834538					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126574940 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			901 bp downstream
Tssr31580	transcription start site region 31580			884 bp downstream
Tssr31581	transcription start site region 31581			875 bp downstream