rs45836058 SNP Detail

Summary

• ID
  rs45836058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:84565011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTCCTTTC TTTCTCCCTT
  TTATTTTGGT GTGGGGGTGG AGCCCAGGGA TGTGTCACTG AGTATTATCC TACAGCCCCC
  TGGTAGCCCT GCTTCACCTC GGTGACACTC AGCTGTTTGT CTGCTCTGCT CACTGTCTTC
  CATTCATAGC CAGCCACAGC TACTGCGTTC TTCTCATTTC CAGAGTTTTG TGATGGTGGG
  Y
  AGGCTCGAGA ACCTGACTCC AGGTCAAGAT GGCTCGGCTT GCGAAGGTGC TTGCCGCAAA
  GCCTGGAGAC CTGAATTAGG TTCCTGGGAC TCATATGGTA GCACAGAACT GACTCCAAGT
  TGTCCTCTGA ACTCCCATGT GTGCTATGGT ATGTGCTCCT ACATACACAC ACACACACGG
  ACACACACAC CCCACATAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135427418	ENSMUSSNP2852661	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45836058					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84565011 () rs orientation: forward

Symbol	Name	Function Class
Gm37240	predicted gene, 37240	within coordinates
Rr68541	regulatory region 68541	1611 bp distal
Rr68542	regulatory region 68542	390 bp proximal
Rr68543	regulatory region 68543	1190 bp proximal
Rr76452	regulatory region 76452	1281 bp proximal