rs45836116 SNP Detail

Summary

• ID
  rs45836116
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19117623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCAAGTA AGGTTTATGG
  AGCTACTTAG AAGCAAGAAT GCTGTGATCC TGAGAGGTAA AAGGTTCCTA CTGTCTGCTG
  CTCAGTAAAC TCATTAGCTG TGTCAGTAAG AGGGCCACAG AAATAGGGTT CAGCCTGCAG
  TCCCAGTACT CAAAGTAGAG GCAACAGGAT TGCCAAAAGT TCAAAGCCAG CCAGAGATTC
  W
  TAGTAACTAC TAGGCCTGCA TAGCAAGATC CTTTGGGGTA GGCGGGTGAG GAATAAGAAT
  TAACAATTAA AAGTCCAGCA GAAGAGGAGG AGCGGAGACT ATCAGTCCTG GGGCCTTGAC
  AGCGATGCCA CTGCTGTGTG TGTTGCCTTG CTGTTCCCGG GTGGTGGCAT GTCAAGGAGA
  GTTCCCCAGA GCGTACGTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148474284	ENSMUSSNP1429989	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45836116					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19117623 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18481	CpG island 18481	1038 bp distal
Ercc2	excision repair cross-complementing rodent repair deficiency, complementation group 2	within coordinates
Gm26852	predicted gene, 26852	within coordinates
Rr400148	regulatory region 400148	1609 bp downstream
Rr643124	regulatory region 643124	1648 bp distal
Rr643125	regulatory region 643125	1680 bp distal
Tssr64844	transcription start site region 64844	1646 bp downstream