rs45836438 SNP Detail

Summary

• ID
  rs45836438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89815418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTAAGGCC TAGCTTGGCT TTCTAATAAA CATAGGATAT
  CTTGCTTGTT CATTCCTTCC CTTTTTTTTT TGTAGCCAGT TGTGGTAACA CATGCTTATC
  R
  TCCAAGGATT GAGAAAAGGC ATGGAAACCA CAAGTTCTCC CTCCCCTCCC CTCCCCTCCC
  CTCCCTTCCC CTCCCCATTA TCTTTCTTTC TGTTCACCTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
ss61031649	NES16093351	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ
rs45836438					SNP	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031649	NES16093351	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89815418 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67723	transcription start site region 67723	662 bp downstream
Tssr67724	transcription start site region 67724	144 bp downstream
Tssr67725	transcription start site region 67725	102 bp downstream
Tssr67726	transcription start site region 67726	87 bp downstream
Tssr67727	transcription start site region 67727	23 bp downstream