rs45837109 SNP Detail

Summary

• ID
  rs45837109
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17462546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT AAAATCCATC TATTCACCTT CTATTGAAAG
  ATGTTATAAA CTTTCAAGCT AATCAAGATG GCTTTTTAAA GGCCAGGGGC CTTGTAACCA
  GTAACACCAG AGTTTCAGAA TGAGCCACAA CCTTCATGAA TAGCGTGATA TTTGGAAGGA
  S
  CCGCTTGAAT CAAGTTTGCT TGGCTGGAAC CCCTGGACAT AGTATAGACC CTTGAAGGAG
  ATTTGAGAAC TGGGTTCTAA CCCTGGCTTT CTTAATACCA GCTGTGTGAG CTTCCTAGGA
  ATTCGTACGG GCTGTTTTAT TCATCTGCAA AATGATTCCG TGCAGGCCTC CAAAACTGTA
  ATAGGAACTT TCCTTTTCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133014954	ENSMUSSNP2204437	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45837109					SNP	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17462546 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	768 bp proximal
Met	met proto-oncogene	1253 bp upstream
Rr626799	regulatory region 626799	763 bp proximal
Rr626800	regulatory region 626800	927 bp proximal
Rr626801	regulatory region 626801	970 bp proximal
Rr626802	regulatory region 626802	1502 bp proximal
Tssr55050	transcription start site region 55050	885 bp upstream
Tssr55051	transcription start site region 55051	1008 bp upstream
Tssr55052	transcription start site region 55052	1202 bp upstream
Tssr55053	transcription start site region 55053	1279 bp upstream
Tssr55054	transcription start site region 55054	1338 bp upstream
Tssr55055	transcription start site region 55055	1354 bp upstream
Tssr55056	transcription start site region 55056	1380 bp upstream
Tssr55057	transcription start site region 55057	1545 bp upstream
Tssr55058	transcription start site region 55058	1585 bp upstream
Tssr55059	transcription start site region 55059	1624 bp upstream