rs45837629 SNP Detail

Summary

• ID
  rs45837629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81202543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCTCTGT CCAGGGCAGG
  TGCCTTCTGA ACCACACACA CCAAGAAGGT CAGCCAGGAA TCAGAAGGCA GGCTGCACCT
  ACCCCTGCAT ATGGAACACG CCCAGCAGGA TTTCCACCAA CAGGAGGTCA CAAGGGCCTG
  TGACACTAGT GCACATCTAA AGGCATTTTG CTTTTGGGTA CAGATGTCAA CAGCAGCAGG
  Y
  GGCCCTGAAC CTTAAACTCC TGTTAAGTGC AGAACCCACT TAGCTCACAA GGCTATGACT
  CCCACAGGCC TGCAGGCAGC CAACCCCATA GTGACTGTGT CCCAGGGGCT TCTCCAGCCA
  TCAGCAGTTT TGGGGCAAGG CAACAAAACA CAGGAGACCG ACCCCAAGGT GTCACAAATA
  CATATATACA CACGTGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52387614	NES15272393	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45837629					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52387614	NES15272393	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81202543 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1975	CpG island 1975	1265 bp distal
Fzr1	fizzy and cell division cycle 20 related 1	170 bp downstream
Mfsd12	major facilitator superfamily domain containing 12	484 bp downstream
Rr435631	regulatory region 435631	403 bp distal
Rr435632	regulatory region 435632	598 bp proximal
Tektip1	tektin bundle interacting protein 1	889 bp upstream
Tssr98595	transcription start site region 98595	1850 bp upstream
Tssr98596	transcription start site region 98596	908 bp upstream
Tssr98597	transcription start site region 98597	884 bp upstream
Tssr98598	transcription start site region 98598	866 bp upstream