rs45837855 SNP Detail

Summary

• ID
  rs45837855
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128677093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTTCT CCTCCTCCCG
  TCTCTCTTTC CCTCCCCCTT TCTCTCTTTC CCTCCTCCTT TCTCTCTCTC CCTCCTCCTC
  TCTCCCTTTC CCTCCCTCCT TCTCCCTTTC CTCCCTTCCT TTTCGTTGTT GTGATGAGTA
  TGGAACCCAG CGCCTTTTAC ACAGTAGGTT CGCTTTCTAT GATGGACCTT TCTATGATGG
  W
  CCGTAAGGTT AGTGAGTGTT CTGATGTATA TTTTTCTGAT TCTCATTAGC TTGAGCATCT
  GCACCTGCAT TTTGACTCAC TTTCTTGTTT GTACTCTTTA AGATCATGGC TCCGGGATCG
  TTTTCGTCTT CATGTTTTCT CTGCAGCTCT CAGAACACAG CAGGTGTTGA GGAATGATTT
  AAGGAAAGGT CAGAGTGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60795874	NES16470129	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs45837855					SNP	T	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60795874	NES16470129	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128677093 () rs orientation: forward

Symbol	Name	Function Class
Gm29599	predicted gene 29599	1570 bp upstream
Gm70593	predicted gene, 70593	within coordinates
Gm70801	predicted gene, 70801	1810 bp upstream
Tssr8546	transcription start site region 8546	1656 bp downstream
Tssr13487	transcription start site region 13487	1805 bp upstream