rs45838246 SNP Detail

Summary

• ID
  rs45838246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99822905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCAATTGC TTCTTAGAAC
  CTTATGAGAT TTACAGGATA GAGATTCCTG TTTGGCAGGT AATGATCCCA AATCTTAAAG
  TAAATTAACC CAGGGCCCAG AGCCAAAGAT GTCTTCACCT GGCCATCCCC ACCACTGTAC
  CTAAATCTTC ACTGCCTGTG TGGCTTCCAG TCTAGGAAGA ACTAGGCAAT TCTGCACTTC
  Y
  GCGTTCAGAT GGTGCTCCCG TAAAGACAGC CACATTTGTT GCCAGTCTTC TATCCTGATG
  ACTCTTGAAA TGATTTGAAA CACCTAATGA AACAAACGGT GCACTTATGA TCCTAGGGTT
  CCAACATCAC CACCCTCATC TTGAAGGATA CCCCCTTCCT CCTACTCCCA TCCCTCCCCC
  TCCCACCCCA CTCTGCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145525858	ENSMUSSNP1326538	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs45838246					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99822905 () rs orientation: forward

Symbol	Name	Function Class
Gm34821	predicted gene, 34821	within coordinates
Tssr68095	transcription start site region 68095	1241 bp downstream