rs45838478 SNP Detail

Summary

• ID
  rs45838478
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113019094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGAATGA GTTTACAGTT
  CCATTCTAGT CATATTTAAA GGAATACAGA CTCTCCCAAT TAGAATTGTT GGAAGAACAA
  GTAGAGAGAG CTACCCTTTA TTCACCTTCT TATACCCTGA TTCCTCCCCA CCCCAATGAA
  TTATCAGAGA TGTGATTTTG CAAAATGTTT GACATTCCCT CTTCTGATCT TGGTTATTAA
  K
  AGATATGCTG CTACAAAAAT GCTGTCTCAC AGACCATTCA AATCTCTGGA GCTTAAAGCA
  ATGGTCACTA ACAGCTGTGG ATCCAGGCCT CATGTTCCAG GGGAAAGAAG GCTTGGTTGT
  AGACTACCGT TTCTGAGGGC TGCCTGTGTT AGACAGGATC CATGCAGCTC CCTCTGCTTC
  ATGCCATGAG GCTCTGCCGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61457026	NES16836224	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs45838478					SNP	T	T	T	T	T	T	G	T	T	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61457026	NES16836224	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113019094 () rs orientation: forward

Symbol	Name	Function Class
Gm4657	predicted gene 4657	211 bp upstream
Rr383929	regulatory region 383929	890 bp upstream
Rr687465	regulatory region 687465	1170 bp proximal