rs45838569 SNP Detail

Summary

• ID
  rs45838569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30803586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGATGAG TGCTTACAGC
  ATGATATAAT AAATTAGAAT TCACTTTCTA ATGTGACTCT AGAGACAAAG ACTGCTCTGC
  TAGTGACATC ATGTCGGGCT AGTGACACCA ATGTCATTAG TAATGTTTAT GTCAGGCAAG
  TATCCTTGGC CTGAACCTAT GGGAAAATAG CCCAGAGTCC TACTGTAGTC GATAAGAACT
  R
  TCTCCCATGG GGAATAGGGG TGGGGAGGCC TGGCAGATGG TGTCCCTTTA GGACACAGTT
  GTGTTTCATC TAGTCTCCAA TGTCTCAGGA AACAGTTTTG GATAAATTAC TACTTCCTTT
  GAAATGACAC AAAACTAAAA GCACTGTGGG GGACACATAG CTCAGAAGTC ACCTCTTGGA
  TCTTTTATCC CTGGTTTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148186547	ENSMUSSNP1757938	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45838569					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30803586 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15682	CpG island 15682	1491 bp proximal
D5Mit389	DNA Segment, Chr 5 Massachusetts Institute of Technology 389	946 bp proximal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Mir5625	microRNA 5625	1694 bp upstream
Rr609028	regulatory region 609028	1201 bp proximal
Slc35f6	solute carrier family 35, member F6	1691 bp upstream
Tssr45603	transcription start site region 45603	1679 bp upstream
Tssr45604	transcription start site region 45604	1693 bp upstream
Tssr45605	transcription start site region 45605	1763 bp upstream