rs45839100 SNP Detail

Summary

• ID
  rs45839100
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:134424190 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAACT CTTTTTTAAA AAGTCAAGAC
  G
  TTTCTTAAAA GAAATTTTGT AGTAG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145506498	ENSMUSSNP4145893	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs45839100					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:134424190 () rs orientation: forward

Symbol	Name	Function Class
Cpgi770	CpG island 770	1338 bp distal
Rabif	RAB interacting factor	Intron
Rr396314	regulatory region 396314	1687 bp downstream
Rr418928	regulatory region 418928	1794 bp distal
Rr418929	regulatory region 418929	1701 bp distal
Rr418930	regulatory region 418930	1260 bp distal
Tssr8899	transcription start site region 8899	1773 bp downstream
Tssr8900	transcription start site region 8900	1689 bp downstream
Tssr8901	transcription start site region 8901	1436 bp downstream