rs45839251 SNP Detail

Summary

• ID
  rs45839251
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161628711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TATAGGACC CACTGTGTTC CAATCATTAG
  GAACACTAAT AATGTCAAGG ACCACAAGAT GGTCCATATT ATGACACTAC TTTGGTACCT
  AGAGTGAGGG TAGCCTAGAA AACAAGATGG GGTTTGTTGA AAATTCAGAT GCAAAGACTC
  R
  GACTGCTTCT TCTAACCAGT TCTGTGGGAG TCTGAAGCCT GGGCAGAGAT GGACAGAGAA
  AGACTCATGG ATCTAGGGGT ATCAGATTCC AATTTGAGAA ATCTATTCCT CAATTTTATA
  AATTGTGGAA GTCATAACAT TTTCTATTTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60335597	NES15842409	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	G	G	A	G		G	A	G	G		A
ss320081689	CHEV_1_163731273	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45839251					SNP	G	A	A	G	G	G	G	A	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60335597	NES15842409	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161628711 () rs orientation: forward

Symbol	Name	Function Class
Rr421849	regulatory region 421849	1876 bp distal
Rr421850	regulatory region 421850	1035 bp distal
Rr421851	regulatory region 421851	252 bp proximal