rs45839902 SNP Detail

Summary

• ID
  rs45839902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74606250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACTCAGGCCT GCCTGGTGGG GAAATGCCTA CAGCGGTGGT
  CTGACCGGTT GGCTAAGCAG ATTAGAGGAG GATCAGATTT CTGGAGGGCC TGCCCTGCTT
  Y
  CTCACCCACA CCCCATTCCC CAGGGCTCCC TGGGGCTCCC TCGGACCCTA CCCAGCCCTC
  TCAGACTGTT CGAGCTCCAC CCCTCAAAGC TGCTGTTCCA C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148149818	ENSMUSSNP7180745	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs45839902					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74606250 () rs orientation: forward

Symbol	Name	Function Class
Gm33124	predicted gene, 33124	480 bp upstream
Lypd2	Ly6/Plaur domain containing 2	72 bp upstream
Tssr134735	transcription start site region 134735	102 bp upstream
Tssr134736	transcription start site region 134736	66 bp upstream
Tssr134737	transcription start site region 134737	34 bp upstream
Tssr134738	transcription start site region 134738	359 bp downstream