rs45840112 SNP Detail

Summary

• ID
  rs45840112
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123259773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTCAAAA TCAGATTGTG
  AGAAAGTCTA ATAGAAGTGC TCGTAATGAG TGCTAATATG TCAAATTAAT TTATTTAGTT
  TAATTTTCCT ACTCAAGGAT ACATGTTTAT TACAATGTGT GACTGCTGCT GAAGGTTCCT
  TTAGGGCTTT GTCTGGAAGA AACATGGTCT ATATTGACAG AATATCATGC AATAAATGCA
  K
  TCCTGAGACA GAAAAATGTG AACATGAATT TTTAAATAAT TTCACTTTGA ACCTACTGAG
  CAGGTTCTAC TTGCGCAGTA GATACAAGTA CAGGTGAAAT CCAGTTTATA GAAGAGAACA
  CAGAGAAAAT GGGGCTCCAG GAAGAGTGGA CTAGATCACA ATCTGTTAGG AACTGAAGTT
  TGACCGGCCT TTCCATATGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936910	NES16189346	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45840112					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936910	NES16189346	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123259773 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	34 bp downstream
Tssr58809	transcription start site region 58809	578 bp upstream
Tssr58810	transcription start site region 58810	604 bp upstream
Tssr58811	transcription start site region 58811	640 bp upstream
Tssr63019	transcription start site region 63019	1242 bp upstream
Tssr63020	transcription start site region 63020	310 bp upstream
Tssr63021	transcription start site region 63021	232 bp upstream
Tssr63022	transcription start site region 63022	193 bp upstream
Tssr63023	transcription start site region 63023	138 bp upstream
Tssr63024	transcription start site region 63024	40 bp upstream
Tssr63025	transcription start site region 63025	8 bp upstream
Tssr63026	transcription start site region 63026	within coordinates
Tssr63027	transcription start site region 63027	44 bp downstream
Tssr63028	transcription start site region 63028	57 bp downstream
Tssr63029	transcription start site region 63029	88 bp downstream
Tssr63030	transcription start site region 63030	118 bp downstream
Tssr63031	transcription start site region 63031	175 bp downstream
Tssr63032	transcription start site region 63032	199 bp downstream
Tssr63033	transcription start site region 63033	224 bp downstream
Tssr63034	transcription start site region 63034	243 bp downstream
Tssr63035	transcription start site region 63035	264 bp downstream
Tssr63036	transcription start site region 63036	318 bp downstream
Tssr63037	transcription start site region 63037	348 bp downstream
Tssr63038	transcription start site region 63038	385 bp downstream
Tssr63039	transcription start site region 63039	444 bp downstream
Tssr63040	transcription start site region 63040	502 bp downstream
Tssr63041	transcription start site region 63041	551 bp downstream
Tssr63042	transcription start site region 63042	576 bp downstream
Tssr63043	transcription start site region 63043	586 bp downstream
Tssr63044	transcription start site region 63044	608 bp downstream
Tssr63045	transcription start site region 63045	699 bp downstream
Tssr63046	transcription start site region 63046	718 bp downstream
Tssr63047	transcription start site region 63047	741 bp downstream
Tssr63048	transcription start site region 63048	769 bp downstream
Tssr63049	transcription start site region 63049	784 bp downstream
Tssr63050	transcription start site region 63050	808 bp downstream
Tssr63051	transcription start site region 63051	860 bp downstream