rs45840662 SNP Detail

Summary

• ID
  rs45840662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:99091826 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TAAGAAGGTG
  AGTAGGAAAA GCCTCCTTTC TACGCTGACA AAGGAGAAGT CTGAATGGAC AGAGGGAGCC
  AATGAGACAC AGAGTTGTCT TGTTTGAGAT CACTGAGTTC TGAGACAGGA AGTACAAAGG
  AATGTGTCGG GAGTGGGCAG GAGTGGGCAG TAAATGGTAG AATGAGTAAG CTTCCAGGGA
  Y
  GCTGAGAGAT TACCACAGCA TCCTGTGTAT CCCGTGGGCT ACAGTGAAGA TCTGGGCATG
  GATCTGAGTC AGTGGTAGAA CTTACAGCAA CTTGAGTCAT CTTTTTTAAT ACAAGAAATA
  AAGTCCAGTA TGGGGTGAGG CTGGCAGGCT GGCGGTGGGA AGCTGTGCTG AAGATATTGA
  AAGAGACGTG GCTCTATCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61200722	NES16706812	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45840662					SNP	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61200722	NES16706812	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:99091826 () rs orientation: forward

Symbol	Name	Function Class
Prkg2	protein kinase, cGMP-dependent, type II	within coordinates
Tssr52014	transcription start site region 52014	194 bp upstream
Tssr52015	transcription start site region 52015	162 bp upstream
Tssr52016	transcription start site region 52016	127 bp upstream
Tssr52017	transcription start site region 52017	76 bp upstream