rs45840719 SNP Detail

Summary

• ID
  rs45840719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32752231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCCTAAT GCCTGTCTTA
  GTGCCTCTCC CTAGTGACCA AGTACTCAAA TCTATGAGCC TGTGGGGGCC ATTCCTATTC
  AAACCTCCAT ACCCTGTTTC TGTGTCTGAG AAGTTGAGAT TCCAGTTACC TGTAATCTGA
  GCAGCGCTTG CACAGAAATG TCAGGGAACA TAAGATGGTG CTTTCTATCA TTCCTCATAA
  Y
  ACATATATCT ACACTAAAAT GTCTATGTTG AAATTTGCCT TTCATAGTCA CTTACTTTGT
  GTATTTTACA GTATGGAGTA ATTCTAGGTA TACCTATTTT TTAAGAGGAA TTTTTTTTTT
  CTTTTTGGAC GGAGATAGTC TTGCAAATTT GTTTCTTAGC GTTTGTATCT AACAGTTGAA
  GCCTTTCCAA CAGTGGATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60384452	NES15878100	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs45840719					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60384452	NES15878100	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32752231 () rs orientation: forward

Symbol	Name	Function Class
Rr575012	regulatory region 575012	16 bp distal
Rr575013	regulatory region 575013	178 bp proximal
Rr575014	regulatory region 575014	314 bp proximal