rs45841725 SNP Detail

Summary

• ID
  rs45841725
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118530553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTCTTT CTGTCGTTAA
  GCCCGTTCAG TACTCTCTTG TTTTCTTTTC CGCTCTCTCC CCCTAAGTTT TCTCTCCATA
  TATGGTGATA GTCTCCACTG CAGAGACTAG CTTGGACCAA TACCTGCCTC CTGAGTTAGC
  TGTGTGGTAC CTTGCTCTGG TCCTGAAGGG ATCTCCGGGG AGATTCCACT TTTGTGGCAA
  R
  ACACATCCTC CTCTTGGGGC AGTGCTGAAG CGGTTCCAGT GGCTTCCTTG ATTGCTTCCC
  AGATGTCATA GACCCCACTT ATCTCTTCCC TTTCCCCCAA ACCAGTCTAG CTTTGGAGGT
  AGCCCCCTCC CCTGCTGTCC AAGTGGTCTG GAGGTGTCAC AGGTAAAACC CAGAGCATGT
  CCTCTTGGCT TCAGGGCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61229502	NES16855839	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss323216692	CHEV_9_118610603	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs45841725					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61229502	NES16855839	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118530553 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Rr688308	regulatory region 688308	1125 bp distal
Rr688309	regulatory region 688309	8 bp distal
Tssr87646	transcription start site region 87646	1863 bp upstream
Tssr87647	transcription start site region 87647	1890 bp upstream
Tssr87648	transcription start site region 87648	1906 bp upstream
Tssr87649	transcription start site region 87649	1950 bp upstream
Tssr87650	transcription start site region 87650	1992 bp upstream
Tssr91958	transcription start site region 91958	375 bp downstream