rs45842396 SNP Detail

Summary

• ID
  rs45842396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127032891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAAGACA GACACACCAT
  CCCACTCCCA CTCTGGCCGC CACAAGGTTG GCGACTATTT TCCCGCTCCC ATGTCCACCC
  CACAACTCCA AGTCCACAGT CATCTTAGAA CACCCCCCCC CCACACACAC ACACACATAC
  TCAGGAGCCC AACACCTTGA AGACCAATAT TTTTCAGTTG GACTCTGTAA CTCTTAAACA
  Y
  AGGATGGGTT ACTCAGTTTT TTAAAAAACA AAAACTTCTG TGAATGACTT AGATCAAATA
  ATTTATTTTA TTGTGATATC GGGAGTAAAT ATACATATTT TATTAACAAA ACAGATGGAA
  AACGGAAGCA GTAAGTGAAG ATGGCAACAC TGCCCACGAC CACAGCCGCA CGGTGAGACC
  CCAGTTGTTA AGGGACCGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61335337	NES16943356	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45842396					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61335337	NES16943356	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127032891 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2345	CpG island 2345	1255 bp distal
Dtx3	deltex 3, E3 ubiquitin ligase	1294 bp upstream
F420014N23Rik	RIKEN cDNA F420014N23 gene	within coordinates
Gm57007	predicted gene, 57007	within coordinates
Pip4k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	45 bp downstream
Rr224404	regulatory region 224404	90 bp distal
Tssr96170	transcription start site region 96170	1724 bp downstream
Tssr99736	transcription start site region 99736	1800 bp upstream
Tssr99737	transcription start site region 99737	1283 bp upstream