rs45842675 SNP Detail

Summary

• ID
  rs45842675
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3767703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAAATA GTAGCAGGAA
  CCTTGGAAGG GTAGCCATGA TGGTGGGCAC TGCTCACAGG AGCCTGTTGG GTGGGGAGGG
  TCAGAGAGAT AGACCGTTAT AGGAAGGGAC CATTGGAATT TGACGGATGG TGTGGGGTTC
  CAGAGAAACA AGGGAATGTC TGGTGGAAAG AGAAGCACTG AAAACCCTCA GCTGGGTCCA
  Y
  TCCTCCCCCA CCCCTCGTCC TATCTCTGGC TCACTGTTCT GGCGCTTGAC AGCTTCCAGT
  GCCTGGAACA GCTCACTGCG GATGTTCTCA CGGTCTCTGC TTGCTTTAGC CAAGTCCTGG
  GTCACTACAA GGTCAGAAGA GTGGACATTT ATAGTTGAGG TTAAGACCGG GACTTATGTA
  TAGGTCAAAA TATATATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148548764	ENSMUSSNP6266188	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs45842675					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3767703 () rs orientation: forward

Symbol	Name	Function Class
Clec4g	C-type lectin domain family 4, member g	within coordinates
Cpgi20034	CpG island 20034	922 bp proximal
Gm16553	predicted gene 16553	within coordinates
Rr400747	regulatory region 400747	866 bp upstream
Rr658970	regulatory region 658970	896 bp proximal
Rr658971	regulatory region 658971	1017 bp proximal
Tssr80223	transcription start site region 80223	145 bp upstream
Tssr80224	transcription start site region 80224	121 bp upstream