rs45843727 SNP Detail

Summary

• ID
  rs45843727
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20159376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAACATTT AGACAAAACT
  GCATAGTACC TTCTTCACAC CATGGAATCT CTTCATCTTG ATTTTAGCCA GGATCTTTTG
  CTACTCCTCC ACAAATATAT GAGACACTGC AAACAAGAAC CACCTCACTG TGCATAGTTC
  ATGCCTCAAA CTGAGATAAT GAAATATTTG GACCTATTTT AATTGACCAT GCTATTTGAA
  R
  ATGGTTTCTT CTAACAGCAG ACAACCAGAA GACTAATTCT CACATAAAGT AGTTGACTTG
  GGAAGAGCAT GAAAAGTCTC ACCCACCTAT TCATAAATAT ATACCGAAGA AAACACACTG
  TTATCCACAC ATAGTTATAT TTGCAAACTA TCTTATGCAA CCCAAAGGTT CTGATTCCAA
  TTAACACAGA CTAATCCACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss134095005	ENSMUSSNP1173464	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs45843727					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20159376 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22643	CpG island 22643	953 bp distal
Rr690378	regulatory region 690378	840 bp distal
Slc9a7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	1330 bp upstream
Tssr163067	transcription start site region 163067	1362 bp upstream
Tssr163068	transcription start site region 163068	1303 bp upstream