rs45843865 SNP Detail

Summary

• ID
  rs45843865
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33898879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TAAGGGACCA TGATCTGGGA ACACAGATCC AGGCTGCCCC
  AAATAGCATG TTCTCGCATG GAAACTTGCT TCACTACGTT TTTGTAATTG CAGAAGAAAA
  R
  GAAGCAATAA ATCAAGGCAT TTTTCCAATG CATTGATGAA AACATCACCA AAGACTGTTA
  GTATTGGGTT TGAGATGGAA GCTGAGAAAA CTCACTTTAG A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134758226	ENSMUSSNP3956528	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45843865					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33898879 () rs orientation: forward

Symbol	Name	Function Class
Ccdc39	coiled-coil domain containing 39	420 bp upstream
Rr575077	regulatory region 575077	50 bp distal
Tssr32964	transcription start site region 32964	482 bp upstream
Tssr32965	transcription start site region 32965	417 bp upstream