rs45845043 SNP Detail

Summary

• ID
  rs45845043
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:137379261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATTATCC ACTGTGGCCC
  TTACCCAAAC ACACGTTACA TTTTTATGTA ATTCAATATA AGCTCTCTAC ATGGAGTTAC
  ACCGTAAAAC TTCTGAAGTG TGCGAGGCTG CCTGCTCACT GAAGCAGTAT CTTATGCCTT
  CAGAAGTGAC ATCATCAGCT CCATTAATTG CCTTCCAGCC ATATGCACGA GAGTTCGACA
  K
  CTCAAGGTTG AGACATTTCA TGGCTCCAAA ATCCTTCTTG ACATAGACAA GGCCCTGCTT
  TAGAATTCAT CATTCCTAAC AATATTTTTC TGTATTATTT AGGCATTCTT AAAGCCATGA
  ATGGCAGAAA TCCTACCCAA ACTGTCTTAC ACCAGAAGAC TTTAGTCAGA ACATATATGT
  TCAGGAAGAA CATTTTGTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60805587	NES16482654	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs45845043					SNP	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60805587	NES16482654	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:137379261 () rs orientation: forward

Symbol	Name	Function Class
Gm70880	predicted gene, 70880	within coordinates
Rr419604	regulatory region 419604	1970 bp proximal