rs45845588 SNP Detail

Summary

• ID
  rs45845588
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:52126300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA AGTAAGAATG TTTTCATATT
  C
  TTCTATAAAT TTAAGTGTAA ACAGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146587534	ENSMUSSNP310865	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320303103	CHEV_2_52091808	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45845588					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52126300 () rs orientation: forward

Symbol	Name	Function Class
Neb	nebulin	Intron
Rr556918	regulatory region 556918	355 bp proximal
Tssr24047	transcription start site region 24047	685 bp upstream