rs45846260 SNP Detail

Summary

• ID
  rs45846260
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117841308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCATGTAT CCTGTCAGTC
  ACAAGGCCTG GAGACCTATT CTTAGACTCT CAGTTCTTAT AGACCTTATT AAAATGGTAA
  TATCCTTGCT GGCATCAATC ACTGACAAAT TATGCACGGG AAACTTGGGC TCCGGTTTGC
  AGAACAAGCT TTTCTGGAGG GGATGGTTCA CAGGGAAGTG CTGGGAAGTG GTAGCCATTC
  Y
  TCAGGGAGTG AAAGGAATAT GTAGAGTTTG AGGGGTGAGC AGGGCAGCCA TTCCAAAAGG
  CTCCAGGAGA GGAAGCTGAT GGGACCACGC TTTGTCTCTG TTGCCTGCTC CTCTGCTAGT
  AGGCGATGGT TGAAACTATC CGAGGTAGAA CAGAGACTTG ATCCCATATT CTACAGTCAC
  GATATTAAAC ATTGGAGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52224724	NES15323647	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45846260					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52224724	NES15323647	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117841308 () rs orientation: forward

Symbol	Name	Function Class
Gm37852	predicted gene, 37852	116 bp downstream
Rr226004	regulatory region 226004	within coordinates
Rr385361	regulatory region 385361	8 bp upstream