rs45847349 SNP Detail

Summary

• ID
  rs45847349
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133855786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG GCCCTTGGTG CGGGGGTTCA
  R
  GCTGGGCCCA GCCCTTGGAC CAGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147518521	ENSMUSSNP2434065	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss321345449	CHEV_4_133684390	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45847349					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133855786 () rs orientation: forward

Symbol	Name	Function Class
Cep85	centrosomal protein 85	1383 bp downstream
Cpgi15028	CpG island 15028	within coordinates
Gm68742	predicted gene, 68742	468 bp downstream
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	within coordinates
Tssr39535	transcription start site region 39535	870 bp downstream
Tssr39536	transcription start site region 39536	760 bp downstream
Tssr39537	transcription start site region 39537	509 bp downstream
Tssr43866	transcription start site region 43866	789 bp upstream
Tssr43867	transcription start site region 43867	755 bp upstream
Tssr43868	transcription start site region 43868	684 bp upstream
Tssr43869	transcription start site region 43869	664 bp upstream
Tssr43870	transcription start site region 43870	502 bp upstream
Tssr43871	transcription start site region 43871	452 bp upstream
Tssr43872	transcription start site region 43872	425 bp upstream
Tssr43873	transcription start site region 43873	399 bp upstream
Tssr43874	transcription start site region 43874	384 bp upstream
Tssr43875	transcription start site region 43875	205 bp downstream
Tssr43876	transcription start site region 43876	232 bp downstream
Tssr43877	transcription start site region 43877	1129 bp downstream
Ubxn11	UBX domain protein 11	1691 bp downstream