rs45847517 SNP Detail

Summary

• ID
  rs45847517
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21695026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCACTTCCTT TCAGATCCTC AGCTGCCCTG CCTCCCACTC
  CAACTCCAGA GAGCAGCCAG CGGGTCACAG TGGTCCCGCC CATGGACCTG GAGCCTAGAG
  A
  GAAATGAGCT CGGAAATCCG GAGCAAATGA GGAGTGGTCC CTGAAACGTC AGTGGCCCTG
  GATGTCGTGA CTGCTAAAGA GAAAAAGAGG AGGAGGCTGT G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145288244	ENSMUSSNP4944237	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs45847517					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21695026 () rs orientation: forward

Symbol	Name	Function Class
Gm52290	predicted gene, 52290	within coordinates
Gm56906	predicted gene, 56906	within coordinates
Rr392397	regulatory region 392397	within coordinates
Rr522958	regulatory region 522958	1548 bp distal
Rr522959	regulatory region 522959	603 bp distal
Rr522960	regulatory region 522960	1060 bp distal
Rr522961	regulatory region 522961	7 bp distal
Rr522962	regulatory region 522962	within coordinates
Rr522963	regulatory region 522963	1370 bp proximal
Tssr142877	transcription start site region 142877	898 bp downstream
Tssr142878	transcription start site region 142878	491 bp downstream
Tssr142879	transcription start site region 142879	143 bp upstream