rs45847783 SNP Detail

Summary

• ID
  rs45847783
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72951922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAATAGTG TTTATTTTCT
  TCTGACTGAA TCTTACCTAT TTTTCTCATC ATCGAGTCCA GGAACCCCAG TAGGCCATGC
  CCAAGCTGTC TCCAGGGAGG ATGCACAGCC ATGAAAAAGC TTTTAGGACA GACCTTTGGA
  GTCTCCAGGG CACGCCTCGC CTTACCCGGA TCCTGGGGCA ATTTGAGCTT TTTGTGAATG
  R
  CTCTCTTGGT CTCAAGGAAA ACCACCCTCT GTGGTTCTCA CACCTTTCAG AAGGGGCGAG
  GAGACCCGAT CCGTGCCAGG CGAGGCGAGC AGTCGTTTCT GTGGCTGGGG GCCTGCGGGC
  AGGTGACAGG AGGCGGAGGT GGAGGCCGCT CAGGACCCGC CCCCACCGCG CTCTCCTCTA
  CGGGAAGTGA TGTGGGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss61420624	NES16804507	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs45847783					SNP	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420624	NES16804507	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72951922 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22026	CpG island 22026	16 bp proximal
Pigbos1	Pigb opposite strand 1	1861 bp downstream
Rab27a	RAB27A, member RAS oncogene family	214 bp upstream
Rr197292	regulatory region 197292	1522 bp distal
Rr197293	regulatory region 197293	522 bp distal
Rr206716	regulatory region 206716	within coordinates
Tssr86076	transcription start site region 86076	162 bp upstream
Tssr86077	transcription start site region 86077	193 bp upstream
Tssr86078	transcription start site region 86078	227 bp upstream
Tssr86079	transcription start site region 86079	246 bp upstream