rs45848396 SNP Detail

Summary

• ID
  rs45848396
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55518693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTTAGG GACCTGGCTC
  ACCTAGCAGG ATCACTCCAG GGGGACCAAA CAGTGTCCTG GTAACCTCTA TCTTAAGGCC
  CCAGCCTAGA ACCATGGGAT AAAGCCAGTG GGTCCAGAAT AACCTGGGAT CCAGAGAGAG
  AGACCTGGGA TCCAGTTCTA GCTCTGCTGT CTTTTCCCAA GAAAGATCCT GTCCTGTTTC
  S
  TCATCAGTAA AATGAAATAG AAACTGATCA ATGTCCTGTT TGCTGAGTGC CATAATGAAT
  ATGAGACACT TGAGCATTGT AAAGGCTACG GAAGGGTTAT CCTGATAACC CCTGTACTTT
  CATCCCCTCT TTAAGAATCT TCTATCTCAT TAAACAGTTC CCACCTCTGC CTTCCAGTTC
  CCAAGGTTAG TTCTCATGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61806359	NES17743855	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45848396					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61806359	NES17743855	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55518693 () rs orientation: forward

Symbol	Name	Function Class
Rgs14	regulator of G-protein signaling 14	within coordinates
Rr369713	regulatory region 369713	1050 bp downstream
Rr480445	regulatory region 480445	1138 bp distal
Rr480446	regulatory region 480446	414 bp distal
Rr480447	regulatory region 480447	467 bp proximal
Tssr119942	transcription start site region 119942	1114 bp downstream
Tssr119943	transcription start site region 119943	1105 bp downstream
Tssr119944	transcription start site region 119944	1067 bp downstream