rs45848489 SNP Detail

Summary

• ID
  rs45848489
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140542462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGGGGTT GGTCAGGAAC
  TCGGGTCTCA GATTGGGTTG GGGTATGTGC CCATTATAAA TTGGGAGTCG TAAGCAGAAA
  GATGGTGAGT CTGAGGCTAG CCTGGGCTAC ATAAATAAGA CATATCTCAA AAAAAAAAGT
  AAGAGGTGGG GAAGGCTTGC CGGGGGTAGC TCAGTGGTAC AATGTTTCCT GCGGTAACAA
  T
  CCGGGGCTTG GCTAACTGTA CCAATGGCGG TCTGCGGTCC TCCAGTTCCT TCTTCCATCT
  TTTGTCATAT TGTAACAAGT TTGTCACAAC CAGAGATGAA ATGTGCTAAC TGTCCTCACC
  ATTAAGTCTC AAACTCAGGT CAAATGGCCA CCTGAGGTGC CTTTTTAATC TATCAAAGCT
  GCTCTGGCCA CCAGGTTCTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss147713870	ENSMUSSNP6270329	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs45848489					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140542462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15197	CpG island 15197	218 bp distal
Gm13032	predicted gene 13032	within coordinates
Padi1	peptidyl arginine deiminase, type I	within coordinates
Rr603557	regulatory region 603557	395 bp proximal
Tssr44282	transcription start site region 44282	983 bp upstream