rs45848605 SNP Detail

Summary

• ID
  rs45848605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTATACAGA AGAGGGCAAC
  TGAGAATAAG AAGCTCATAT GAGAGGGAGC TGTGTGCATG AAGGTGTGGG CACATGTAAG
  AGGTTCTGGG AGTGTGAAAG ACCACCCAAA CACACAGTAT CCCTCCATAC CAGCTGCAGC
  GGGCGCTCAG CTGTGCCTGG GTGTGCTGTT GGCTGCTTGT GCCTAGGAAG GAATGCAGGC
  Y
  CTCTGTCGCT TGTTCCTCCC CTTTTGCCTC CTCTCCCTAA GCATCTCTGA GTGACCATGC
  CTATTTCTCT CTGCTTCCTA GTGTGTGTGG CTTGTGGGAG CCCTGGGCTC ATTTCCTGGT
  CTCTCTGCCG TAGTGTGCAT TTCTAGAAAT GGTTTAAAAA TTCTCAGCGA CTGGTAAGAG
  AGAGAAATCG AGTTTCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135874499	ENSMUSSNP385048	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320958002	CHEV_3_127600301	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45848605					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	860 bp distal
Fam241a	family with sequence similarity 241, member A	1060 bp upstream
Rr398009	regulatory region 398009	810 bp downstream
Rr584896	regulatory region 584896	1364 bp distal
Rr584897	regulatory region 584897	569 bp distal
Tssr35607	transcription start site region 35607	1870 bp upstream
Tssr35608	transcription start site region 35608	1150 bp upstream
Tssr35609	transcription start site region 35609	1113 bp upstream
Tssr35610	transcription start site region 35610	1046 bp upstream