rs45848800 SNP Detail

Summary

• ID
  rs45848800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164288901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGTGCCTC CAGCAGGTGC AGCACACAGC TGGGTGTGGA
  CCAACCAAGA GCGCTGTTCC CGCAGTACCT GTGCAAGTTC ACTGGAGAAA GAGTGTATTC
  R
  GCTCAGTATA AGGGCTCAAG GAGAGAACAA CTGTCAGACA TCTTTCTGTG CTGGCTAGGG
  AAAAGAGATG GTTCTGGTAT CCTATGATTG GTTCTGCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60337198	NES15839704	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45848800					SNP	A	A	A	A	A	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337198	NES15839704	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164288901 () rs orientation: forward

Symbol	Name	Function Class
Gm32391	predicted gene, 32391	within coordinates
Gm70485	predicted gene, 70485	within coordinates
Rr422219	regulatory region 422219	within coordinates
Rr422220	regulatory region 422220	553 bp proximal
Rr422221	regulatory region 422221	707 bp proximal
Tssr14749	transcription start site region 14749	483 bp upstream
Tssr14750	transcription start site region 14750	461 bp upstream