rs45849323 SNP Detail

Summary

• ID
  rs45849323
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121425853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAAAGGG GGAAGGCCCA
  TCCGCCACCA TGCCAAGTTC TTGATGCTTT GTCGCCAGGC TGTCAGCACT TGGTCACCAG
  GCTGTTGCTT ATTCATGAAG GTCTCAGGAA GACAGGTTCA GCCTCTCGGC TGGTAGGCAG
  CATCTTGGAG AAAAGTGCTG AGGCGGCAGA GCAATAGACC TATCTAGGTC GGAAGACTCT
  R
  CCCTAGGTGG TCTCATTCAC AGAGGTGGAA CAGGTCTGAG CCAGCCTGCT CAAGGCTGGG
  GGAGGCTACA ACCCACCAGA GGTAGTGGAA AAGAAAGGAG TATATGGGGG AAGTGGACCT
  GTTTAGAAAT GGTACTTTGG AGCAAATCCC ATCTGTGCAG TCAGGAAGCC AGCAGTTCAG
  CTTACAGATC AGCAGCGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61239950	NES16854020	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs45849323					SNP	A	A	A	A	A	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61239950	NES16854020	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121425853 () rs orientation: forward

Symbol	Name	Function Class
Gm57058	predicted gene, 57058	within coordinates
Lyzl4	lysozyme-like 4	within coordinates
Lyzl4os	lysozyme-like 4, opposite strand	within coordinates
Rr199243	regulatory region 199243	1853 bp distal
Rr199244	regulatory region 199244	1453 bp distal
Tssr92055	transcription start site region 92055	422 bp downstream