rs45851825 SNP Detail

Summary

• ID
  rs45851825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20887606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCACAGG CGGTGGGGCG
  ACGGCCTTCG CCGGGGACCC CGCCCATGAA CTCTGAAAGC TTTCCCCGCT CGCTCGTCCG
  TAGCACCTTT CATCCTAGCC GGAGACAGAG AAGAAGGGAT GCTGCACCTC TCCCCAACAA
  CCTCACTGCC CCAAACCCTG CTTCCTGAGA ACCCCCATCC AGTCTTGCAA AGTCTCCAGC
  Y
  CAAAGCGCTC GGATTCCGCC TTTCTCTTCA GCGCCAACTT CCTGCCCGAA GGAAGGCGGG
  GAGCTCAGTC TGGGGGTGCG CCACTGAGTA GGTGGCGAGC TGCCTGGAGT AGTGGGCAGG
  GGCGCATGGT AGATGATCTG TTCCCTCGGT GCAGCAGAGC CTGGAGCAGC GCGTGCAACG
  CCTGTACGAG CGCCTGACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61357545	NES16731719	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T	C		T	T	C	T
ss136225110	ENSMUSSNP6296912	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45851825					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61357545	NES16731719	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20887606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21408	CpG island 21408	within coordinates
Rr193935	regulatory region 193935	795 bp proximal
Rr206018	regulatory region 206018	within coordinates
Rr383049	regulatory region 383049	716 bp upstream
S1pr2	sphingosine-1-phosphate receptor 2	within coordinates
Tssr83937	transcription start site region 83937	383 bp downstream
Tssr88347	transcription start site region 88347	361 bp downstream
Tssr88348	transcription start site region 88348	411 bp downstream
Tssr88349	transcription start site region 88349	452 bp downstream