rs45852473 SNP Detail

Summary

• ID
  rs45852473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:51479171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAAGGGAG AGTGATATGG
  GCAAGGGGAA GGTTGGAGGG AGGAAAGGGA GGGAGAAAAA TGATGTAGTT ATATTTCAGC
  TTCAAACTCT GTAACAAATG AGTACCCCAA ATTCTCACTA GCAACTAGCT ATATTGATGA
  ATATTATACA TAGGCAACAA AATTTTTGAA CTGGTCAACA AAACTGCTTT CAAACCATTC
  Y
  CCAGACTTAG CCTGCACTGC TCAGCATCAC AGGCAGTTAC TTTTCTCTAG CACCCTTGAC
  CATGACAAAG ATGTGCCCAG TGGAGAGGCA GCACTACAAG ATAACTAGAA GCCATTCTTT
  CTCCTCCTCT TTCCCAGGTT CCTGTGGCAT CCCTGGTTGA CAGTCTCTTC CTTAACTCCA
  GTTCCCTTCA GACTATTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145753185	ENSMUSSNP4014915	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs45852473					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:51479171 () rs orientation: forward

Symbol	Name	Function Class
Rr528702	regulatory region 528702	231 bp distal
Rr528703	regulatory region 528703	357 bp proximal
Tbc1d5	TBC1 domain family, member 5	within coordinates
Tssr148604	transcription start site region 148604	496 bp upstream