rs45852603 SNP Detail

Summary

• ID
  rs45852603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84510420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAAACTT GTGGGAGAAA
  TGTCACTTTA TCTGAGAGAG TAAAATCCAA CTCTAACAGG AAACAGCAAA TTCATCTTTT
  TTCTTTTTCT AAACCACTCT GCTGGAGACA AGTCCCTTGA GTCAGAGCTC TTTAAGGCGC
  ACTTCCTTTA CATGGGTCAA ACTGAAGCCA CCGGTTTGTG AGTCCCCAAA GGAATCACTG
  R
  AGGACAACAG GAGCATTTTC AGATACCTTT CAGGGCAGAC CTGCCCTGGC TGTACCCCCT
  ATCTTGAAGA AAAAGAAAAA CGAATAAGGT GAAAATCGCA ACTACTATTT ATAGAATCAA
  AATGGGTTCA TCCATTGAGT TTTAACTTTC AAAAATCATA AAGTACCATC CTAAATATCT
  GAGATTTCTT GAATTGCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss60500117	NES16522450	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G		A	G		A
ss325261442	CHEV_16_84713777	CHEVERUD	SCREENING_POP	f	SNP							G			A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs45852603					SNP	G	G	G	A	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60500117	NES16522450	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84510420 () rs orientation: forward

Symbol	Name	Function Class
Mir155	microRNA 155	608 bp upstream
Mir155hg	Mir155 host gene (non-protein coding)	within coordinates
Rr404941	regulatory region 404941	197 bp downstream
Rr518521	regulatory region 518521	within coordinates
Rr518522	regulatory region 518522	217 bp proximal
Tssr139172	transcription start site region 139172	1672 bp downstream
Tssr139173	transcription start site region 139173	670 bp upstream
Tssr139174	transcription start site region 139174	1453 bp upstream
Tssr139175	transcription start site region 139175	1541 bp upstream