rs45853342 SNP Detail

Summary

• ID
  rs45853342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:35666926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCAACCAT AACCTCCATG
  ATTGTGTTCA TCTCCCCTCC CTTCTAATAA GCTGTCCTCA TTGTCTAGAG GATAGTTTCA
  TTCAACTCCT TTCTGGAACC AAATGACCAT TTTCCTTCAT CCTCCCTTTA ACAATCTGGA
  GATTCACCCA GTCTCTGGGT TTCACAGCCA TCATATCTCC TTCTGCATCT GACATCATGG
  Y
  GATCCTCCAG TCATCTCCTT CTGCATCTGA GCATGTGCAC CTATAATGGC CTAGGAGGTT
  GTCCTGGGAC CTCTGCTTGT CACACTTCAG AGCCTTGTAT TTAGTTTTGG TTTTGGTTTG
  AGGTGCTGGG GATTAAATGT AGGGTCTTAA GTGTGCTAGG TAAGCACTCT ACAGTGAGTT
  TACTCCTCAT CAGCCTACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148913802	ENSMUSSNP2523875	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs45853342					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:35666926 () rs orientation: forward

Symbol	Name	Function Class
Gm37068	predicted gene, 37068	within coordinates
Rr371096	regulatory region 371096	1044 bp upstream