rs45853388 SNP Detail

Summary

• ID
  rs45853388
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:103254920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGC CAGGAAATAT TTGCACAAAG
  M
  AAGACCAGCC TCTATCCATG TCCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148500013	ENSMUSSNP5544730	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
ss325087098	CHEV_15_103176924	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45853388					SNP	C	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103254920 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	within coordinates
Rr404655	regulatory region 404655	754 bp upstream
Rr510623	regulatory region 510623	904 bp proximal
Tssr136772	transcription start site region 136772	1919 bp upstream
Tssr136773	transcription start site region 136773	1837 bp upstream
Tssr136774	transcription start site region 136774	1769 bp upstream
Tssr136775	transcription start site region 136775	1726 bp upstream
Tssr136776	transcription start site region 136776	1704 bp upstream
Tssr136777	transcription start site region 136777	1660 bp upstream
Tssr136778	transcription start site region 136778	762 bp downstream