rs45853513 SNP Detail

Summary

• ID
  rs45853513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTGTATT TCCTTGCACT
  TAGTCCAGAG GACTTATTTC TGGCATCTCA CAAATCCAAG GCATACTGTA GAAACAGGGT
  ATATCATTCC AGTTCTTCCT GGAGTTTGAA GAGTCCCTTA TGGTGGCACA GTCCTCCACC
  AAAACTATAT TGTTGGGCTC CCCAGCATCC CAGAAGCTGT GAAGGAAAAA CACAGGAGAT
  Y
  TTAAATATCA GAAATAGCAG CCTTAACATA GCAAACAACT TACATATTTG TTATTTAACT
  ATCATTTTGG GAGATGGAAA TTATAATCTC CATTTTATCA ATGAGAAAAC CCATTTGCCT
  ACATCATCAG ATGGTGGGAC ATTACTGGAT TTTTATGCTG TTATGCAGAT CTATAGATTT
  AAACTCATAA AGGGGCATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936896	NES16189360	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs45853513					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936896	NES16189360	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260680 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	Intron
Tssr58808	transcription start site region 58808	941 bp downstream
Tssr58809	transcription start site region 58809	304 bp downstream
Tssr58810	transcription start site region 58810	279 bp downstream
Tssr58811	transcription start site region 58811	190 bp downstream
Tssr63020	transcription start site region 63020	1217 bp upstream
Tssr63021	transcription start site region 63021	1139 bp upstream
Tssr63022	transcription start site region 63022	1100 bp upstream
Tssr63023	transcription start site region 63023	1045 bp upstream
Tssr63024	transcription start site region 63024	947 bp upstream
Tssr63025	transcription start site region 63025	915 bp upstream
Tssr63026	transcription start site region 63026	894 bp upstream
Tssr63027	transcription start site region 63027	856 bp upstream
Tssr63028	transcription start site region 63028	831 bp upstream
Tssr63029	transcription start site region 63029	803 bp upstream
Tssr63030	transcription start site region 63030	747 bp upstream
Tssr63031	transcription start site region 63031	717 bp upstream
Tssr63032	transcription start site region 63032	686 bp upstream
Tssr63033	transcription start site region 63033	672 bp upstream
Tssr63034	transcription start site region 63034	646 bp upstream
Tssr63035	transcription start site region 63035	631 bp upstream
Tssr63036	transcription start site region 63036	564 bp upstream
Tssr63037	transcription start site region 63037	531 bp upstream
Tssr63038	transcription start site region 63038	506 bp upstream
Tssr63039	transcription start site region 63039	438 bp upstream
Tssr63040	transcription start site region 63040	394 bp upstream
Tssr63041	transcription start site region 63041	347 bp upstream
Tssr63042	transcription start site region 63042	327 bp upstream
Tssr63043	transcription start site region 63043	310 bp upstream
Tssr63044	transcription start site region 63044	275 bp upstream
Tssr63045	transcription start site region 63045	195 bp upstream
Tssr63046	transcription start site region 63046	182 bp upstream
Tssr63047	transcription start site region 63047	161 bp upstream
Tssr63048	transcription start site region 63048	127 bp upstream
Tssr63049	transcription start site region 63049	103 bp upstream
Tssr63050	transcription start site region 63050	58 bp upstream
Tssr63051	transcription start site region 63051	36 bp upstream
Tssr63052	transcription start site region 63052	1466 bp downstream
Tssr63053	transcription start site region 63053	1576 bp downstream
Tssr63054	transcription start site region 63054	1743 bp downstream
Tssr63055	transcription start site region 63055	1770 bp downstream
Tssr63056	transcription start site region 63056	1811 bp downstream
Tssr63057	transcription start site region 63057	1844 bp downstream