rs45854020 SNP Detail

Summary

• ID
  rs45854020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:44058726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGTA GGCCAAAATG AGTAGTGAAC
  R
  CTTGAGTTTT CATGACGGCG ATAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146433169	ENSMUSSNP325751	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss325817163	CHEV_19_44144777	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs45854020					SNP	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:44058726 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10883	CpG island 10883	113 bp distal
Erlin1	ER lipid raft associated 1	502 bp upstream
Gm59010	predicted gene, 59010	within coordinates
Rr548150	regulatory region 548150	417 bp distal
Rr548151	regulatory region 548151	26 bp distal
Rr548152	regulatory region 548152	190 bp proximal
Tssr159429	transcription start site region 159429	865 bp upstream
Tssr159430	transcription start site region 159430	612 bp upstream
Tssr159431	transcription start site region 159431	579 bp upstream
Tssr159432	transcription start site region 159432	500 bp upstream