rs45854503 SNP Detail

Summary

• ID
  rs45854503
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46505119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGGAGGG GCTGCCTTAG
  CTCTCAGTCC TTCCCTGGAT CTTGGTAGAG CACCTTCCTA CAGGGAGCAC TTTATCTGAA
  TCATGGACTT CCTGTCTAGA GCACACACTG AAATCCAGTC TTCTAAATAA GCATGGCGCA
  GTCTTGCCCT GGCCTTGCCT CTCACCCCAC TGGCCCTCTC AGGCCTAGAA CCTTTTGACG
  R
  TGGTCTGCAC AGGGCTCTCT AAGTCTGCTG CCTCCACTCT CCTGTCTTGA TTTCTGTCCT
  CCTGGGTCTA GACACAATCC CAGACCTGTA AATATCACTT CTCAGACACC AGCTACATCT
  GTCCTTCACC TTTGGTTTAT TGAATAAATC CTTGCTGAAG GCCTTCCAAA CCTGGCCCAA
  TGGGACACAG GCCCCTGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss60312531	NES15816120	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs45854503					SNP	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312531	NES15816120	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46505119 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11005	CpG island 11005	1013 bp distal
Rr363443	regulatory region 363443	1081 bp proximal
Rr370520	regulatory region 370520	1367 bp upstream
Trim8	tripartite motif-containing 8	225 bp downstream
Tssr156777	transcription start site region 156777	1340 bp downstream
Tssr156778	transcription start site region 156778	918 bp downstream
Tssr156779	transcription start site region 156779	824 bp downstream
Tssr156780	transcription start site region 156780	501 bp downstream
Tssr156781	transcription start site region 156781	477 bp downstream
Tssr156782	transcription start site region 156782	371 bp downstream