rs45856363 SNP Detail

Summary

• ID
  rs45856363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37740546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCCACCCC CAAGGTCTGG AGATTGGCTG CCTTCTGAGT
  CTGTGATAGA GAGAAAATCG ACAAACAGCT CAGGAATGAA AACACTGTCC CTGAGAACAA
  Y
  TAGAAGAGAG GATGCGATTG TTTATCCCCC TAATATAAAA ATGTCTGTAG TGGGGAGGAA
  CAGCCGGAAG TTCAACAGTG CGAGAAAGAT CACTGGGAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134811074	ENSMUSSNP5404968	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320711761	CHEV_3_37585319	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs45856363					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37740546 () rs orientation: forward

Symbol	Name	Function Class
Gm65174	predicted gene, 65174	635 bp downstream
Rr575540	regulatory region 575540	382 bp proximal
Rr575541	regulatory region 575541	753 bp proximal
Rr575542	regulatory region 575542	855 bp proximal
Rr575543	regulatory region 575543	1335 bp proximal