About   Help   FAQ
rs45857554 SNP Detail
Summary
  • ID
    rs45857554
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr12:85149044 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCCCTGGCT GGCTACCCAC
    GTAATGGGAT TCAAGTCCTG AGCCACCATG CTCATCTTCA ATTTGTTTTT AATTTTAAAT
    TTATTTATTT TATTTTATTT TATTTTATGG GCCTGAGTGA GGTTTTTTTG TTTTGCTTTG
    TTTTTTTTGT TTTTTTCATC ATACATCTGC CTGGTGCCCG TGGAGGACAA AAGGGACCAG
    K
    AGATCCTGTG GAACTGCAGT TACAGTCGTG TGTGAGCTGC TATGTGTGAG TGTGTTGGAA
    ACCTTACCCG ACTGCCCCCC AGAAATATAG CAGCTGACCA AGAGGAACCG AGGGGTGGAG
    GGAACTTCTA GCCTTCACTC TGTACCTTGG TTGAAATTTT ATAACAATGT GTTTGTTACT
    TGTGTATAAA TGCACATGTG                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss52449564 NES15419791 PERLEGEN MM_PANEL2 f SNP G G G G G G T G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs45857554 SNP G G G G G G T G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss52449564 NES15419791 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:85149044 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
D12Mit257 DNA Segment, Chr 12, Massachusetts Institute of Technology 257 1758 bp distal
Gm38355 predicted gene, 38355 within coordinates
Prox2 prospero homeobox 2 within coordinates
Rr264587 regulatory region 264587 893 bp proximal
Rr268707 regulatory region 268707 645 bp distal
Rr269802 regulatory region 269802 105 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
12/17/2024
MGI 6.24
The Jackson Laboratory