AGCCCTGGCT GGCTACCCAC GTAATGGGAT TCAAGTCCTG AGCCACCATG CTCATCTTCA ATTTGTTTTT AATTTTAAAT TTATTTATTT TATTTTATTT TATTTTATGG GCCTGAGTGA GGTTTTTTTG TTTTGCTTTG TTTTTTTTGT TTTTTTCATC ATACATCTGC CTGGTGCCCG TGGAGGACAA AAGGGACCAG K AGATCCTGTG GAACTGCAGT TACAGTCGTG TGTGAGCTGC TATGTGTGAG TGTGTTGGAA ACCTTACCCG ACTGCCCCCC AGAAATATAG CAGCTGACCA AGAGGAACCG AGGGGTGGAG GGAACTTCTA GCCTTCACTC TGTACCTTGG TTGAAATTTT ATAACAATGT GTTTGTTACT TGTGTATAAA TGCACATGTG K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss52449564 | NES15419791 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | T | G | G | G | G | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs45857554 | SNP | G | G | G | G | G | G | T | G | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss52449564 | NES15419791 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr12:85149044 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
D12Mit257 | DNA Segment, Chr 12, Massachusetts Institute of Technology 257 | 1758 bp distal | ||||||
Gm38355 | predicted gene, 38355 | within coordinates | ||||||
Prox2 | prospero homeobox 2 | within coordinates | ||||||
Rr264587 | regulatory region 264587 | 893 bp proximal | ||||||
Rr268707 | regulatory region 268707 | 645 bp distal | ||||||
Rr269802 | regulatory region 269802 | 105 bp distal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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